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Unveiling viral diversity through wholevirome sequencing

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Author
Saláková, MartinaORCiD Profile - 0000-0003-0827-1211WoS Profile - GBC-6751-2022Scopus Profile - 23012783400
Kadlečková, DominikaORCiD Profile - 0000-0002-4312-7373WoS Profile - GMA-2277-2022Scopus Profile - 57771777900
Šimić, Ivana
Tachezy, RuthORCiD Profile - 0000-0001-7689-9727WoS Profile - H-3785-2017Scopus Profile - 6701593451

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Publication date
2024
Published in
Czech Chemical Society Symposium Series
Publisher / Publication place
Česká společnost chemická
Volume / Issue
22 (6)
ISBN / ISSN
ISSN: 2336-7202
ISBN / ISSN
eISSN: 2336-7210
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  • Faculty of Science
Abstract
In the dynamic landscape of viral metagenomics, our research focuses on whole-virome sequencing using the Novel enrichment technique of viromes protocol (NetoVir protocol, 1), which we have adapted to diverse starting materials. The NetoVir protocol is a robust and fast approach for efficiently identifying DNA and RNA viruses without structural or genome preferences, ranging from small Picornaviridae to large viruses of the Mimiviridae family. The individual steps of the protocol allow for the enrichment of capsid-protected viruses, and through random nucleic acid amplification, sufficient reads can be obtained for subsequent bioinformatic analysis. Using a comprehensive bioinformatics, we can obtain information on a wide range of viruses without limiting our investigation to specific virus groups. This allows us to gain insight not only into known but also into unknown viruses.
Keywords
viral, DNA
Permanent link
https://hdl.handle.net/20.500.14178/2660
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Full text of this result is licensed under: Creative Commons Uveďte původ 4.0 International

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